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Identification and rapid mapping of a gene conferring broad-spectrum late blight resistance in the diploid potato species Solanum verrucosum through DNA capture technologies.

Identifieur interne : 000745 ( Main/Exploration ); précédent : 000744; suivant : 000746

Identification and rapid mapping of a gene conferring broad-spectrum late blight resistance in the diploid potato species Solanum verrucosum through DNA capture technologies.

Auteurs : Xinwei Chen [Royaume-Uni] ; Dominika Lewandowska [Royaume-Uni] ; Miles R. Armstrong [Royaume-Uni] ; Katie Baker [Royaume-Uni] ; Tze-Yin Lim [États-Unis] ; Micha Bayer [Royaume-Uni] ; Brian Harrower [Royaume-Uni] ; Karen Mclean [Royaume-Uni] ; Florian Jupe [États-Unis] ; Kamil Witek [Royaume-Uni] ; Alison K. Lees [Royaume-Uni] ; Jonathan D. Jones [Royaume-Uni] ; Glenn J. Bryan [Royaume-Uni] ; Ingo Hein [Royaume-Uni]

Source :

RBID : pubmed:29560514

Descripteurs français

English descriptors

Abstract

KEY MESSAGE

A broad-spectrum late blight disease-resistance gene from Solanum verrucosum has been mapped to potato chromosome 9. The gene is distinct from previously identified-resistance genes. We have identified and characterised a broad-spectrum resistance to Phytophthora infestans from the wild Mexican species Solanum verrucosum. Diagnostic resistance gene enrichment (dRenSeq) revealed that the resistance is not conferred by previously identified nucleotide-binding, leucine-rich repeat genes. Utilising the sequenced potato genome as a reference, two complementary enrichment strategies that target resistance genes (RenSeq) and single/low-copy number genes (Generic-mapping enrichment Sequencing; GenSeq), respectively, were deployed for the rapid, SNP-based mapping of the resistance through bulked-segregant analysis. Both approaches independently positioned the resistance, referred to as Rpi-ver1, to the distal end of potato chromosome 9. Stringent post-enrichment read filtering identified a total of 64 informative SNPs that corresponded to the expected ratio for significant polymorphisms in the parents as well as the bulks. Of these, 61 SNPs are located on potato chromosome 9 and reside within 27 individual genes, which in the sequenced potato clone DM locate to positions 45.9 to 60.9 Mb. RenSeq- and GenSeq-derived SNPs within the target region were converted into allele-specific PCR-based KASP markers and further defined the position of the resistance to a 4.3 Mb interval at the bottom end of chromosome 9 between positions 52.62-56.98 Mb.


DOI: 10.1007/s00122-018-3078-6
PubMed: 29560514
PubMed Central: PMC5945768


Affiliations:


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Le document en format XML

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<name sortKey="Lewandowska, Dominika" sort="Lewandowska, Dominika" uniqKey="Lewandowska D" first="Dominika" last="Lewandowska">Dominika Lewandowska</name>
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<name sortKey="Armstrong, Miles R" sort="Armstrong, Miles R" uniqKey="Armstrong M" first="Miles R" last="Armstrong">Miles R. Armstrong</name>
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<nlm:affiliation>The James Hutton Institute, ICS, Dundee, DD2 5DA, UK.</nlm:affiliation>
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<name sortKey="Harrower, Brian" sort="Harrower, Brian" uniqKey="Harrower B" first="Brian" last="Harrower">Brian Harrower</name>
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<nlm:affiliation>The James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
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<name sortKey="Mclean, Karen" sort="Mclean, Karen" uniqKey="Mclean K" first="Karen" last="Mclean">Karen Mclean</name>
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<nlm:affiliation>The James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
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<wicri:noRegion>DD2 5DA</wicri:noRegion>
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<name sortKey="Jupe, Florian" sort="Jupe, Florian" uniqKey="Jupe F" first="Florian" last="Jupe">Florian Jupe</name>
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<nlm:affiliation>Monsanto, Saint Louis, 63167, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Monsanto, Saint Louis, 63167</wicri:regionArea>
<wicri:noRegion>63167</wicri:noRegion>
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<name sortKey="Witek, Kamil" sort="Witek, Kamil" uniqKey="Witek K" first="Kamil" last="Witek">Kamil Witek</name>
<affiliation wicri:level="1">
<nlm:affiliation>The Sainsbury Laboratory, Norwich Research Park, Norwich, NR4 7GJ, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>The Sainsbury Laboratory, Norwich Research Park, Norwich, NR4 7GJ</wicri:regionArea>
<wicri:noRegion>NR4 7GJ</wicri:noRegion>
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<name sortKey="Lees, Alison K" sort="Lees, Alison K" uniqKey="Lees A" first="Alison K" last="Lees">Alison K. Lees</name>
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<country xml:lang="fr">Royaume-Uni</country>
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<name sortKey="Jones, Jonathan D" sort="Jones, Jonathan D" uniqKey="Jones J" first="Jonathan D" last="Jones">Jonathan D. Jones</name>
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<nlm:affiliation>The Sainsbury Laboratory, Norwich Research Park, Norwich, NR4 7GJ, UK.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
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<name sortKey="Bryan, Glenn J" sort="Bryan, Glenn J" uniqKey="Bryan G" first="Glenn J" last="Bryan">Glenn J. Bryan</name>
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<nlm:affiliation>The James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK.</nlm:affiliation>
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<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Scotland's Rural College (SRUC), Peter Wilson Building, West Mains Road, Edinburgh, EH9 3JG</wicri:regionArea>
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<name sortKey="Hein, Ingo" sort="Hein, Ingo" uniqKey="Hein I" first="Ingo" last="Hein">Ingo Hein</name>
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<nlm:affiliation>The James Hutton Institute, CMS, Errol Road, Dundee, DD2 5DA, UK. Ingo.Hein@hutton.ac.uk.</nlm:affiliation>
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<nlm:affiliation>School of Life Sciences, Division of Plant Sciences, University of Dundee at the James Hutton Institute, Dundee, DD2 5DA, UK. Ingo.Hein@hutton.ac.uk.</nlm:affiliation>
<country xml:lang="fr">Royaume-Uni</country>
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<series>
<title level="j">TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</title>
<idno type="eISSN">1432-2242</idno>
<imprint>
<date when="2018" type="published">2018</date>
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<keywords scheme="KwdEn" xml:lang="en">
<term>Chromosome Mapping (MeSH)</term>
<term>DNA, Plant (genetics)</term>
<term>Diploidy (MeSH)</term>
<term>Disease Resistance (genetics)</term>
<term>Genes, Plant (MeSH)</term>
<term>Genetic Markers (MeSH)</term>
<term>Phytophthora infestans (MeSH)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Diseases (microbiology)</term>
<term>Polymorphism, Single Nucleotide (MeSH)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Solanum (genetics)</term>
<term>Solanum (microbiology)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>ADN des plantes (génétique)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Cartographie chromosomique (MeSH)</term>
<term>Diploïdie (MeSH)</term>
<term>Gènes de plante (MeSH)</term>
<term>Maladies des plantes (génétique)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Marqueurs génétiques (MeSH)</term>
<term>Phytophthora infestans (MeSH)</term>
<term>Polymorphisme de nucléotide simple (MeSH)</term>
<term>Résistance à la maladie (génétique)</term>
<term>Solanum (génétique)</term>
<term>Solanum (microbiologie)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>DNA, Plant</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Disease Resistance</term>
<term>Plant Diseases</term>
<term>Solanum</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>ADN des plantes</term>
<term>Maladies des plantes</term>
<term>Résistance à la maladie</term>
<term>Solanum</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr">
<term>Maladies des plantes</term>
<term>Solanum</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en">
<term>Plant Diseases</term>
<term>Solanum</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Chromosome Mapping</term>
<term>Diploidy</term>
<term>Genes, Plant</term>
<term>Genetic Markers</term>
<term>Phytophthora infestans</term>
<term>Polymorphism, Single Nucleotide</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Analyse de séquence d'ADN</term>
<term>Cartographie chromosomique</term>
<term>Diploïdie</term>
<term>Gènes de plante</term>
<term>Marqueurs génétiques</term>
<term>Phytophthora infestans</term>
<term>Polymorphisme de nucléotide simple</term>
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<div type="abstract" xml:lang="en">
<p>
<b>KEY MESSAGE</b>
</p>
<p>A broad-spectrum late blight disease-resistance gene from Solanum verrucosum has been mapped to potato chromosome 9. The gene is distinct from previously identified-resistance genes. We have identified and characterised a broad-spectrum resistance to Phytophthora infestans from the wild Mexican species Solanum verrucosum. Diagnostic resistance gene enrichment (dRenSeq) revealed that the resistance is not conferred by previously identified nucleotide-binding, leucine-rich repeat genes. Utilising the sequenced potato genome as a reference, two complementary enrichment strategies that target resistance genes (RenSeq) and single/low-copy number genes (Generic-mapping enrichment Sequencing; GenSeq), respectively, were deployed for the rapid, SNP-based mapping of the resistance through bulked-segregant analysis. Both approaches independently positioned the resistance, referred to as Rpi-ver1, to the distal end of potato chromosome 9. Stringent post-enrichment read filtering identified a total of 64 informative SNPs that corresponded to the expected ratio for significant polymorphisms in the parents as well as the bulks. Of these, 61 SNPs are located on potato chromosome 9 and reside within 27 individual genes, which in the sequenced potato clone DM locate to positions 45.9 to 60.9 Mb. RenSeq- and GenSeq-derived SNPs within the target region were converted into allele-specific PCR-based KASP markers and further defined the position of the resistance to a 4.3 Mb interval at the bottom end of chromosome 9 between positions 52.62-56.98 Mb.</p>
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<Month>03</Month>
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<Issue>6</Issue>
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<Year>2018</Year>
<Month>Jun</Month>
</PubDate>
</JournalIssue>
<Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title>
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<ArticleTitle>Identification and rapid mapping of a gene conferring broad-spectrum late blight resistance in the diploid potato species Solanum verrucosum through DNA capture technologies.</ArticleTitle>
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<MedlinePgn>1287-1297</MedlinePgn>
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<AbstractText Label="KEY MESSAGE" NlmCategory="UNASSIGNED">A broad-spectrum late blight disease-resistance gene from Solanum verrucosum has been mapped to potato chromosome 9. The gene is distinct from previously identified-resistance genes. We have identified and characterised a broad-spectrum resistance to Phytophthora infestans from the wild Mexican species Solanum verrucosum. Diagnostic resistance gene enrichment (dRenSeq) revealed that the resistance is not conferred by previously identified nucleotide-binding, leucine-rich repeat genes. Utilising the sequenced potato genome as a reference, two complementary enrichment strategies that target resistance genes (RenSeq) and single/low-copy number genes (Generic-mapping enrichment Sequencing; GenSeq), respectively, were deployed for the rapid, SNP-based mapping of the resistance through bulked-segregant analysis. Both approaches independently positioned the resistance, referred to as Rpi-ver1, to the distal end of potato chromosome 9. Stringent post-enrichment read filtering identified a total of 64 informative SNPs that corresponded to the expected ratio for significant polymorphisms in the parents as well as the bulks. Of these, 61 SNPs are located on potato chromosome 9 and reside within 27 individual genes, which in the sequenced potato clone DM locate to positions 45.9 to 60.9 Mb. RenSeq- and GenSeq-derived SNPs within the target region were converted into allele-specific PCR-based KASP markers and further defined the position of the resistance to a 4.3 Mb interval at the bottom end of chromosome 9 between positions 52.62-56.98 Mb.</AbstractText>
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<Affiliation>School of Life Sciences, Division of Plant Sciences, University of Dundee at the James Hutton Institute, Dundee, DD2 5DA, UK. Ingo.Hein@hutton.ac.uk.</Affiliation>
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<Agency>Biotechnology and Biological Sciences Research Council</Agency>
<Country>United Kingdom</Country>
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